IL_9TI5_164

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI5_164 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1612

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TI5|1|a|C|1313
9TI5|1|a|G|1314
9TI5|1|a|G|1315
9TI5|1|a|A|1316
9TI5|1|a|U|1317
9TI5|1|a|U|1318
*
9TI5|1|a|A|1339
9TI5|1|a|U|1340
9TI5|1|a|G|1341
9TI5|1|a|A|1342
9TI5|1|a|A|1343
9TI5|1|a|G|1344

Current chains

Chain a

16S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain n

30S ribosomal protein S13