IL_9TI6_041

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI6_041 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.0742

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9TI6|1|A|G|1081
9TI6|1|A|C|1082
9TI6|1|A|G|1083
*
9TI6|1|A|C|1160
9TI6|1|A|A|1161
9TI6|1|A|C|1162

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Y

50S ribosomal protein L25