IL_9TI6_075

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI6_075 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.1968

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TI6|1|A|U|1878
9TI6|1|A|U|1879
9TI6|1|A|A|1880
9TI6|1|A|A|1881
9TI6|1|A|G|1882
*
9TI6|1|A|C|1914
9TI6|1|A|G|1915
9TI6|1|A|A|1916
9TI6|1|A|A|1917
9TI6|1|A|G|1918

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA