IL_9TI7_088

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AUU*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_088 not in the Motif Atlas

Geometric match to IL_9AXU_020

Geometric discrepancy: 0.131

The information below is about IL_9AXU_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9TI7|1|A|A|2123
9TI7|1|A|U|2124
9TI7|1|A|U|2125
*
9TI7|1|A|G|2218
9TI7|1|A|C|2219
9TI7|1|A|U|2220

Current chains

Chain A

23S rRNA

Nearby chains