IL_9TI8_023

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_023 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0731

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9TI8|1|A|U|748
9TI8|1|A|G|749
9TI8|1|A|A|750
9TI8|1|A|A|751
9TI8|1|A|G|752
*
9TI8|1|A|U|769
9TI8|1|A|G|770
9TI8|1|A|G|771
9TI8|1|A|A|772
9TI8|1|A|G|773

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2