IL_9TI8_031
3D structure
- PDB id
- 9TI8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.18 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TI8_031 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0706
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9TI8|1|A|G|901
9TI8|1|A|A|902
9TI8|1|A|G|903
9TI8|1|A|G|904
9TI8|1|A|U|905
9TI8|1|A|A|906
9TI8|1|A|G|907
*
9TI8|1|A|C|960
9TI8|1|A|G|961
9TI8|1|A|A|962
9TI8|1|A|A|963
9TI8|1|A|U|964
9TI8|1|A|G|965
9TI8|1|A|C|966
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L27
Coloring options: