IL_9TI8_109

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_109 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3256

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.3

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9TI8|1|A|U|2867
9TI8|1|A|G|2868
9TI8|1|A|G|2869
9TI8|1|A|A|2870
9TI8|1|A|A|2871
9TI8|1|A|G|2872
*
9TI8|1|A|U|2885
9TI8|1|A|G|2886
9TI8|1|A|G|2887
9TI8|1|A|A|2888
9TI8|1|A|G|2889

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19