IL_9TI9_131

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

9TI9|1|a|U|420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI9_131 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.2014

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9TI9|1|a|U|417
9TI9|1|a|G|418
9TI9|1|a|A|419
9TI9|1|a|U|420
9TI9|1|a|G|421
9TI9|1|a|A|422
9TI9|1|a|A|423
9TI9|1|a|G|424
*
9TI9|1|a|C|435
9TI9|1|a|G|436
9TI9|1|a|U|437
9TI9|1|a|A|438
9TI9|1|a|A|439
9TI9|1|a|A|440
9TI9|1|a|A|441

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4