IL_9TKP_151

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCA

Length

39 nucleotides

Bulged bases

9TKP|1|D2|U|2130, 9TKP|1|D2|U|2132, 9TKP|1|D2|G|2133, 9TKP|1|D2|C|2161, 9TKP|1|D2|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|U|2122
9TKP|1|D2|G|2123
9TKP|1|D2|G|2124
9TKP|1|D2|G|2125
9TKP|1|D2|A|2126
9TKP|1|D2|G|2127
9TKP|1|D2|G|2128
9TKP|1|D2|C|2129
9TKP|1|D2|U|2130
9TKP|1|D2|U|2131
9TKP|1|D2|U|2132
9TKP|1|D2|G|2133
9TKP|1|D2|A|2134
9TKP|1|D2|A|2135
9TKP|1|D2|G|2136
9TKP|1|D2|U|2137
*
9TKP|1|D2|A|2154
9TKP|1|D2|U|2155
9TKP|1|D2|G|2156
9TKP|1|D2|G|2157
9TKP|1|D2|A|2158
9TKP|1|D2|G|2159
9TKP|1|D2|C|2160
9TKP|1|D2|C|2161
9TKP|1|D2|G|2162
9TKP|1|D2|A|2163
9TKP|1|D2|C|2164
9TKP|1|D2|C|2165
9TKP|1|D2|U|2166
9TKP|1|D2|U|2167
9TKP|1|D2|G|2168
9TKP|1|D2|A|2169
9TKP|1|D2|A|2170
9TKP|1|D2|A|2171
9TKP|1|D2|U|2172
9TKP|1|D2|A|2173
9TKP|1|D2|C|2174
9TKP|1|D2|C|2175
9TKP|1|D2|A|2176

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL1