IL_9TKQ_139

3D structure

PDB id

9TKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9TKQ|1|D2|A|1801, 9TKQ|1|D2|C|1816, 9TKQ|1|D2|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKQ|1|D2|U|1798
9TKQ|1|D2|G|1799
9TKQ|1|D2|C|1800
9TKQ|1|D2|A|1801
9TKQ|1|D2|A|1802
9TKQ|1|D2|A|1803
9TKQ|1|D2|C|1804
*
9TKQ|1|D2|G|1813
9TKQ|1|D2|G|1814
9TKQ|1|D2|A|1815
9TKQ|1|D2|C|1816
9TKQ|1|D2|G|1817
9TKQ|1|D2|U|1818
9TKQ|1|D2|A|1819
9TKQ|1|D2|U|1820
9TKQ|1|D2|A|1821

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain D1

Small subunit ribosomal RNA; SSU rRNA