IL_9TKQ_156

3D structure

PDB id

9TKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

9TKQ|1|D2|C|2164, 9TKQ|1|D2|U|2167, 9TKQ|1|D2|G|2168, 9TKQ|1|D2|A|2171, 9TKQ|1|D2|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKQ|1|D2|G|2124
9TKQ|1|D2|G|2125
9TKQ|1|D2|A|2126
9TKQ|1|D2|G|2127
*
9TKQ|1|D2|C|2161
9TKQ|1|D2|G|2162
9TKQ|1|D2|A|2163
9TKQ|1|D2|C|2164
9TKQ|1|D2|C|2165
9TKQ|1|D2|U|2166
9TKQ|1|D2|U|2167
9TKQ|1|D2|G|2168
9TKQ|1|D2|A|2169
9TKQ|1|D2|A|2170
9TKQ|1|D2|A|2171
9TKQ|1|D2|U|2172
9TKQ|1|D2|A|2173
9TKQ|1|D2|C|2174

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL1