IL_9TQA_003

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

9TQA|1|A|C|48, 9TQA|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TQA_003 not in the Motif Atlas

Geometric match to IL_8B0X_003

Geometric discrepancy: 0.037

The information below is about IL_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9TQA|1|A|C|47
9TQA|1|A|C|48
9TQA|1|A|U|49
9TQA|1|A|A|50
9TQA|1|A|A|51
9TQA|1|A|C|52
*
9TQA|1|A|G|359
9TQA|1|A|G|360
9TQA|1|A|G|361

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12