IL_9TQA_010

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TQA_010 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.1954

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9TQA|1|A|C|132
9TQA|1|A|U|133
9TQA|1|A|G|134
9TQA|1|A|C|135
9TQA|1|A|C|136
*
9TQA|1|A|G|227
9TQA|1|A|A|228
9TQA|1|A|U|229
9TQA|1|A|G|230

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20