IL_9TQA_057

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9TQA|1|A|C|1400, 9TQA|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TQA_057 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1813

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9TQA|1|A|C|1399
9TQA|1|A|C|1400
9TQA|1|A|G|1401
*
9TQA|1|A|C|1501
9TQA|1|A|A|1502
9TQA|1|A|A|1503
9TQA|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain X

mRNA

Chain Z

Transfer RNA; tRNA