IL_9TQA_105

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TQA_105 not in the Motif Atlas

Geometric match to IL_8B0X_103

Geometric discrepancy: 0.0754

The information below is about IL_8B0X_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9TQA|1|a|G|1038
9TQA|1|a|A|1039
9TQA|1|a|A|1040
9TQA|1|a|G|1041
*
9TQA|1|a|C|1114
9TQA|1|a|G|1115
9TQA|1|a|G|1116
9TQA|1|a|C|1117

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6

Chain l

Large ribosomal subunit protein uL16

Chain u

Large ribosomal subunit protein bL25