IL_9TT7_020

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

9TT7|1|L5|A|937, 9TT7|1|L5|A|938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_020 not in the Motif Atlas

Geometric match to IL_8GLP_035

Geometric discrepancy: 0.0253

The information below is about IL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9TT7|1|L5|A|723
9TT7|1|L5|C|724
*
9TT7|1|L5|G|936
9TT7|1|L5|A|937
9TT7|1|L5|A|938
9TT7|1|L5|U|939

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

Large ribosomal subunit protein uL30