IL_9TT7_025

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAC*GUCG

Length

7 nucleotides

Bulged bases

9TT7|1|L5|C|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_025 not in the Motif Atlas

Geometric match to IL_8GLP_213

Geometric discrepancy: 0.1327

The information below is about IL_8GLP_213

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9TT7|1|L5|C|1080
9TT7|1|L5|A|1081
9TT7|1|L5|C|1082
*
9TT7|1|L5|G|1202
9TT7|1|L5|U|1203
9TT7|1|L5|C|1204
9TT7|1|L5|G|1205

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21