IL_9TT7_066

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

9TT7|1|L5|A|2418

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_066 not in the Motif Atlas

Homologous match to IL_9AXU_059

Geometric discrepancy: 0.1526

The information below is about IL_9AXU_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9TT7|1|L5|OMU|2405
9TT7|1|L5|G|2406
9TT7|1|L5|A|2407
9TT7|1|L5|A|2408
9TT7|1|L5|C|2409
*
9TT7|1|L5|G|2417
9TT7|1|L5|A|2418
9TT7|1|L5|A|2419

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39