IL_9TT7_107

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9TT7|1|L5|A|4504, 9TT7|1|L5|C|4505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_107 not in the Motif Atlas

Homologous match to IL_9H3G_123

Geometric discrepancy: 0.0825

The information below is about IL_9H3G_123

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9TT7|1|L5|C|4444
9TT7|1|L5|U|4445
*
9TT7|1|L5|A|4503
9TT7|1|L5|A|4504
9TT7|1|L5|C|4505
9TT7|1|L5|G|4506

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23