IL_9TV2_025

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAC*GUCG

Length

7 nucleotides

Bulged bases

9TV2|1|L5|C|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_025 not in the Motif Atlas

Geometric match to IL_9PN5_162

Geometric discrepancy: 0.1208

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9TV2|1|L5|C|1080
9TV2|1|L5|A|1081
9TV2|1|L5|C|1082
*
9TV2|1|L5|G|1202
9TV2|1|L5|U|1203
9TV2|1|L5|C|1204
9TV2|1|L5|G|1205

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21