IL_9TV2_038

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_038 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.0361

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9TV2|1|L5|C|1547
9TV2|1|L5|G|1548
9TV2|1|L5|A|1549
9TV2|1|L5|A|1550
9TV2|1|L5|G|1551
*
9TV2|1|L5|U|1568
9TV2|1|L5|G|1569
9TV2|1|L5|G|1570
9TV2|1|L5|A|1571
9TV2|1|L5|G|1572

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a