IL_9TV2_082

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9TV2|1|L5|A|3814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_082 not in the Motif Atlas

Homologous match to IL_8GLP_113

Geometric discrepancy: 0.041

The information below is about IL_8GLP_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9TV2|1|L5|C|3618
9TV2|1|L5|C|3619
*
9TV2|1|L5|G|3813
9TV2|1|L5|A|3814
9TV2|1|L5|G|3815

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41