IL_9TV2_095

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9TV2|1|L5|A|4189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_095 not in the Motif Atlas

Homologous match to IL_8GLP_137

Geometric discrepancy: 0.0456

The information below is about IL_8GLP_137

Detailed Annotation

AG tHS outside loop

Broad Annotation

AG tHS outside loop

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9TV2|1|L5|G|4177
9TV2|1|L5|A|4178
*
9TV2|1|L5|U|4188
9TV2|1|L5|A|4189
9TV2|1|L5|C|4190

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a