IL_9TV2_098
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- U(PSU)GA*(PSU)ACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TV2_098 not in the Motif Atlas
- Homologous match to IL_9AXU_094
- Geometric discrepancy: 0.117
- The information below is about IL_9AXU_094
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9TV2|1|L5|U|4281
9TV2|1|L5|PSU|4282
9TV2|1|L5|G|4283
9TV2|1|L5|A|4284
*
9TV2|1|L5|PSU|4298
9TV2|1|L5|A|4299
9TV2|1|L5|C|4300
9TV2|1|L5|A|4301
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: