IL_9TV2_119

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9TV2|1|L5|A|4642, 9TV2|1|L5|U|4643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_119 not in the Motif Atlas

Homologous match to IL_8GLP_163

Geometric discrepancy: 0.0302

The information below is about IL_8GLP_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9TV2|1|L5|U|4627
9TV2|1|L5|U|4628
*
9TV2|1|L5|A|4641
9TV2|1|L5|A|4642
9TV2|1|L5|U|4643
9TV2|1|L5|G|4644

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31