IL_9TV2_122
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CCUCGGAUAG*UGCGGAGUG
- Length
- 19 nucleotides
- Bulged bases
- 9TV2|1|L5|C|4743, 9TV2|1|L5|U|4744, 9TV2|1|L5|A|4750, 9TV2|1|L5|G|4855, 9TV2|1|L5|C|4856, 9TV2|1|L5|G|4858, 9TV2|1|L5|U|4861
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|C|4742
9TV2|1|L5|C|4743
9TV2|1|L5|U|4744
9TV2|1|L5|C|4745
9TV2|1|L5|G|4746
9TV2|1|L5|G|4747
9TV2|1|L5|A|4748
9TV2|1|L5|U|4749
9TV2|1|L5|A|4750
9TV2|1|L5|G|4751
*
9TV2|1|L5|U|4854
9TV2|1|L5|G|4855
9TV2|1|L5|C|4856
9TV2|1|L5|G|4857
9TV2|1|L5|G|4858
9TV2|1|L5|A|4859
9TV2|1|L5|G|4860
9TV2|1|L5|U|4861
9TV2|1|L5|G|4862
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LH
- 60S ribosomal protein L9
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
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