IL_9TV2_129

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

9TV2|1|L5|C|4998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_129 not in the Motif Atlas

Homologous match to IL_9H3G_145

Geometric discrepancy: 0.2095

The information below is about IL_9H3G_145

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9TV2|1|L5|G|4997
9TV2|1|L5|C|4998
9TV2|1|L5|A|4999
*
9TV2|1|L5|U|5020
9TV2|1|L5|C|5021

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA