IL_9TV2_130
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TV2_130 not in the Motif Atlas
- Homologous match to IL_8GLP_179
- Geometric discrepancy: 0.046
- The information below is about IL_8GLP_179
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9TV2|1|L5|A|4999
9TV2|1|L5|G|5000
9TV2|1|L5|A|5001
9TV2|1|L5|G|5002
*
9TV2|1|L5|C|5017
9TV2|1|L5|G|5018
9TV2|1|L5|A|5019
9TV2|1|L5|U|5020
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SI
- 40S ribosomal protein S8
Coloring options: