IL_9TZ9_035
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GGAAAAC*GGAAGAUUUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9TZ9|1|a|A|1133, 9TZ9|1|a|U|1136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ9_035 not in the Motif Atlas
- Homologous match to IL_7A0S_037
- Geometric discrepancy: 0.3223
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9TZ9|1|a|G|1030
9TZ9|1|a|G|1031
9TZ9|1|a|A|1032
9TZ9|1|a|A|1033
9TZ9|1|a|A|1034
9TZ9|1|a|A|1035
9TZ9|1|a|C|1036
*
9TZ9|1|a|G|1130
9TZ9|1|a|G|1131
9TZ9|1|a|A|1132
9TZ9|1|a|A|1133
9TZ9|1|a|G|1134
9TZ9|1|a|A|1135
9TZ9|1|a|U|1136
9TZ9|1|a|U|1137
9TZ9|1|a|U|1138
9TZ9|1|a|A|1139
9TZ9|1|a|A|1140
9TZ9|1|a|C|1141
9TZ9|1|a|G|1142
9TZ9|1|a|G|1143
9TZ9|1|a|G|1144
9TZ9|1|a|G|1145
9TZ9|1|a|C|1146
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain Z
- Coxiellacae Large Subunit Peptide (CLaSP)
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain s
- Large ribosomal subunit protein uL16
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