IL_9TZ9_043

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GCAAC*GAC

Length

8 nucleotides

Bulged bases

9TZ9|1|a|A|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_043 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2092

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9TZ9|1|a|G|1329
9TZ9|1|a|C|1330
9TZ9|1|a|A|1331
9TZ9|1|a|A|1332
9TZ9|1|a|C|1333
*
9TZ9|1|a|G|1341
9TZ9|1|a|A|1342
9TZ9|1|a|C|1343

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL22