IL_9TZ9_055

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGAAG*CAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_055 not in the Motif Atlas

Geometric match to IL_4WF9_073

Geometric discrepancy: 0.2463

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZ9|1|a|C|1536
9TZ9|1|a|G|1537
9TZ9|1|a|A|1538
9TZ9|1|a|A|1539
9TZ9|1|a|G|1540
*
9TZ9|1|a|C|1557
9TZ9|1|a|A|1558
9TZ9|1|a|A|1559
9TZ9|1|a|A|1560
9TZ9|1|a|G|1561

Current chains

Chain a

23S ribosomal RNA

Nearby chains