IL_9TZ9_071

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_071 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2564

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZ9|1|a|U|1865
9TZ9|1|a|U|1866
9TZ9|1|a|A|1867
9TZ9|1|a|A|1868
9TZ9|1|a|G|1869
*
9TZ9|1|a|C|1903
9TZ9|1|a|G|1904
9TZ9|1|a|A|1905
9TZ9|1|a|A|1906
9TZ9|1|a|G|1907

Current chains

Chain a

23S ribosomal RNA

Nearby chains