IL_9TZ9_095

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9TZ9|1|a|U|2507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_095 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2777

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9TZ9|1|a|A|2475
9TZ9|1|a|U|2476
9TZ9|1|a|A|2477
*
9TZ9|1|a|U|2505
9TZ9|1|a|G|2506
9TZ9|1|a|U|2507
9TZ9|1|a|U|2508
9TZ9|1|a|U|2509

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Coxiellacae Large Subunit Peptide (CLaSP)

Chain s

Large ribosomal subunit protein uL16