IL_9TZ9_111

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_111 not in the Motif Atlas

Geometric match to IL_8B0X_169

Geometric discrepancy: 0.0653

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9TZ9|1|a|G|2858
9TZ9|1|a|G|2859
9TZ9|1|a|U|2860
9TZ9|1|a|G|2861
*
9TZ9|1|a|C|2885
9TZ9|1|a|U|2886
9TZ9|1|a|A|2887
9TZ9|1|a|A|2888
9TZ9|1|a|C|2889

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein bL19

Chain m

Large ribosomal subunit protein bL17