IL_9TZE_059

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_059 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.158

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZE|1|A|C|1300
9TZE|1|A|G|1301
9TZE|1|A|G|1302
9TZE|1|A|A|1303
9TZE|1|A|U|1304
9TZE|1|A|U|1305
*
9TZE|1|A|A|1326
9TZE|1|A|U|1327
9TZE|1|A|G|1328
9TZE|1|A|A|1329
9TZE|1|A|A|1330
9TZE|1|A|G|1331

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13