IL_9TZE_117

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

9TZE|1|a|U|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_117 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4572

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

9TZE|1|a|C|1427
9TZE|1|a|G|1428
9TZE|1|a|A|1429
9TZE|1|a|U|1430
9TZE|1|a|G|1431
*
9TZE|1|a|C|1592
9TZE|1|a|U|1593
9TZE|1|a|A|1594
9TZE|1|a|A|1595
9TZE|1|a|G|1596

Current chains

Chain a

23S ribosomal RNA

Nearby chains