IL_9TZE_125

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAAG*CAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_125 not in the Motif Atlas

Geometric match to IL_4WF9_073

Geometric discrepancy: 0.2462

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZE|1|a|C|1536
9TZE|1|a|G|1537
9TZE|1|a|A|1538
9TZE|1|a|A|1539
9TZE|1|a|G|1540
*
9TZE|1|a|C|1557
9TZE|1|a|A|1558
9TZE|1|a|A|1559
9TZE|1|a|A|1560
9TZE|1|a|G|1561

Current chains

Chain a

23S ribosomal RNA

Nearby chains