IL_9TZE_141

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_141 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.256

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZE|1|a|U|1865
9TZE|1|a|U|1866
9TZE|1|a|A|1867
9TZE|1|a|A|1868
9TZE|1|a|G|1869
*
9TZE|1|a|C|1903
9TZE|1|a|G|1904
9TZE|1|a|A|1905
9TZE|1|a|A|1906
9TZE|1|a|G|1907

Current chains

Chain a

23S ribosomal RNA

Nearby chains