IL_9TZE_158

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_158 not in the Motif Atlas

Geometric match to IL_8GLP_245

Geometric discrepancy: 0.262

The information below is about IL_8GLP_245

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9TZE|1|a|U|2307
9TZE|1|a|A|2308
9TZE|1|a|C|2309
*
9TZE|1|a|G|2355
9TZE|1|a|U|2356
9TZE|1|a|G|2357

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL18

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5