IL_9TZE_181

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_181 not in the Motif Atlas

Geometric match to IL_8B0X_169

Geometric discrepancy: 0.0649

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9TZE|1|a|G|2858
9TZE|1|a|G|2859
9TZE|1|a|U|2860
9TZE|1|a|G|2861
*
9TZE|1|a|C|2885
9TZE|1|a|U|2886
9TZE|1|a|A|2887
9TZE|1|a|A|2888
9TZE|1|a|C|2889

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein bL19

Chain m

Large ribosomal subunit protein bL17