IL_9U70_008

3D structure

PDB id

9U70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE AND RNAS WITH A SINGLE BULGE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UG*CGA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9U70_008 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.3852

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9U70|8|A|U|4
9U70|8|A|G|5
*
9U70|8|A|C|15
9U70|8|A|DG|16
9U70|8|A|A|17

Current chains

Chain A

DNA/RNA (5'-R(*GP*GP*AP*UP*GP*CP*UP*UP*UP*CP*GP*AP*GP*C)-D(P*G)-R(P*AP*UP*CP*C)-3')

Nearby chains