IL_9UWH_029

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

9UWH|1|A|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_029 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1447

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9UWH|1|A|A|2473
9UWH|1|A|C|2474
9UWH|1|A|U|2475
9UWH|1|A|C|2476
9UWH|1|A|G|2477
9UWH|1|A|G|2478
*
9UWH|1|A|C|2653
9UWH|1|A|U|2654
9UWH|1|A|G|2655
9UWH|1|A|U|2656

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3m

Chain L

Large ribosomal subunit protein uL14m

Chain Q

Large ribosomal subunit protein bL19m