IL_9UWH_044

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_044 not in the Motif Atlas

Homologous match to IL_7A0S_084

Geometric discrepancy: 0.1999

The information below is about IL_7A0S_084

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9UWH|1|A|G|2941
9UWH|1|A|C|2942
*
9UWH|1|A|G|2983
9UWH|1|A|A|2984
9UWH|1|A|C|2985

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3m

Chain N

Large ribosomal subunit protein uL16m

Chain W

Large ribosomal subunit protein bL27m

Chain o

Large ribosomal subunit protein mL63