IL_9UWH_055

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_055 not in the Motif Atlas

Geometric match to IL_8P9A_344

Geometric discrepancy: 0.1681

The information below is about IL_8P9A_344

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9UWH|1|A|C|3119
9UWH|1|A|C|3120
9UWH|1|A|C|3121
9UWH|1|A|U|3122
9UWH|1|A|G|3123
9UWH|1|A|U|3124
9UWH|1|A|A|3125
9UWH|1|A|C|3126
*
9UWH|1|A|G|3131
9UWH|1|A|G|3132
9UWH|1|A|A|3133
9UWH|1|A|C|3134
9UWH|1|A|A|3135
9UWH|1|A|A|3136
9UWH|1|A|G|3137

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains