IL_9UWH_057

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UUUG

Length

6 nucleotides

Bulged bases

9UWH|1|A|U|3228, 9UWH|1|A|U|3229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_057 not in the Motif Atlas

Geometric match to IL_8P9A_313

Geometric discrepancy: 0.1399

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

9UWH|1|A|C|3212
9UWH|1|A|A|3213
*
9UWH|1|A|U|3227
9UWH|1|A|U|3228
9UWH|1|A|U|3229
9UWH|1|A|G|3230

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32m

Chain 7

Large ribosomal subunit protein mL39

Chain E

Large ribosomal subunit protein uL3m

Chain O

Large ribosomal subunit protein bL17m