IL_9UWH_070

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_070 not in the Motif Atlas

Homologous match to IL_6CZR_127

Geometric discrepancy: 0.2424

The information below is about IL_6CZR_127

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

9UWH|1|AA|G|834
9UWH|1|AA|C|835
9UWH|1|AA|A|836
9UWH|1|AA|A|837
9UWH|1|AA|U|838
*
9UWH|1|AA|A|852
9UWH|1|AA|C|853

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AM

Small ribosomal subunit protein bS16m

Chain AT

Small ribosomal subunit protein mS25

Chain AU

Small ribosomal subunit protein mS26