IL_9UWH_082

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_082 not in the Motif Atlas

Geometric match to IL_4WF9_052

Geometric discrepancy: 0.2807

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9UWH|1|AA|A|1067
9UWH|1|AA|A|1068
9UWH|1|AA|A|1069
9UWH|1|AA|C|1070
9UWH|1|AA|U|1071
*
9UWH|1|AA|A|1087
9UWH|1|AA|C|1088
9UWH|1|AA|U|1089
9UWH|1|AA|A|1090
9UWH|1|AA|U|1091

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

Small ribosomal subunit protein uS11m

Chain AQ

MRPS21 isoform 1