IL_9UWH_083

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_083 not in the Motif Atlas

Geometric match to IL_8CRE_425

Geometric discrepancy: 0.0857

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9UWH|1|AA|A|1109
9UWH|1|AA|A|1110
9UWH|1|AA|C|1111
*
9UWH|1|AA|G|1130
9UWH|1|AA|C|1131
9UWH|1|AA|U|1132

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Small ribosomal subunit protein mS37

Chain AD

Small ribosomal subunit protein uS5m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AN

Small ribosomal subunit protein uS17m

Chain AT

Small ribosomal subunit protein mS25