IL_9VVI_012
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9VVI|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_012 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.4604
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9VVI|1|A|G|147
9VVI|1|A|G|148
9VVI|1|A|A|149
9VVI|1|A|U|150
9VVI|1|A|A|151
9VVI|1|A|A|152
9VVI|1|A|C|153
*
9VVI|1|A|G|168
9VVI|1|A|C|169
9VVI|1|A|U|170
9VVI|1|A|A|171
9VVI|1|A|A|172
9VVI|1|A|U|173
9VVI|1|A|A|174
9VVI|1|A|C|175
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- Small ribosomal subunit protein bS20
Coloring options: