IL_9VVI_022
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 9VVI|1|A|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_022 not in the Motif Atlas
- Geometric match to IL_8B0X_021
- Geometric discrepancy: 0.0627
- The information below is about IL_8B0X_021
- Detailed Annotation
- tWW-tWH-tHS
- Broad Annotation
- tWW-tWH-tHS
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9VVI|1|A|G|446
9VVI|1|A|G|447
9VVI|1|A|A|448
9VVI|1|A|G|449
9VVI|1|A|G|450
*
9VVI|1|A|C|483
9VVI|1|A|G|484
9VVI|1|A|U|485
9VVI|1|A|U|486
9VVI|1|A|A|487
9VVI|1|A|C|488
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: